8XP2

Cryo-EM structure of the human 40S ribosome with LARP1


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth Ln]60S ribosomal protein L41
B [auth S2]18S rRNA---
C [auth SA]40S ribosomal protein SA
D [auth SB]40S ribosomal protein S3a
E [auth SD]40S ribosomal protein S3
F [auth SE]40S ribosomal protein S4, X isoform
G [auth SF]40S ribosomal protein S5
H [auth SH]40S ribosomal protein S7
I [auth SI]40S ribosomal protein S8
J [auth SK]40S ribosomal protein S10
L [auth SP]40S ribosomal protein S15
M [auth SQ]40S ribosomal protein S16
N [auth SR]40S ribosomal protein S17
O [auth SS]40S ribosomal protein S18
P [auth ST]40S ribosomal protein S19
Q [auth SU]40S ribosomal protein S20
R [auth SV]40S ribosomal protein S21
S [auth SX]40S ribosomal protein S23
T [auth Sa]40S ribosomal protein S26
U [auth Sc]40S ribosomal protein S28
V [auth Sd]40S ribosomal protein S29
W [auth Sg]Receptor of activated protein C kinase 1
X [auth SC]40S ribosomal protein S2
Y [auth SG]40S ribosomal protein S6
Z [auth SJ]40S ribosomal protein S9
AA [auth SM]40S ribosomal protein S12
BA [auth SN]40S ribosomal protein S13
DA [auth SW]40S ribosomal protein S15a
EA [auth SY]40S ribosomal protein S24
FA [auth SZ]40S ribosomal protein S25
GA [auth Sb]40S ribosomal protein S27
HA [auth Se]40S ribosomal protein S30
IA [auth Sf]Ubiquitin-40S ribosomal protein S27a
JA [auth JD]La-related protein 1
K [auth SL]40S ribosomal protein S11
CA [auth SO]40S ribosomal protein S14

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth Ln]IPR007836Large ribosomal subunit protein eS32Family
C [auth SA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth SA]IPR001865Small ribosomal subunit protein uS2Family
C [auth SA]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
C [auth SA]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
C [auth SA]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
C [auth SA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth SA]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
D [auth SB]IPR001593Small ribosomal subunit protein eS1Family
D [auth SB]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth SB]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
E [auth SD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
E [auth SD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth SD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth SD]IPR004044K Homology domain, type 2Domain
E [auth SD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth SD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
E [auth SD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
F [auth SE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth SE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
F [auth SE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth SE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth SE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth SE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
F [auth SE]IPR002942RNA-binding S4 domainDomain
F [auth SE]IPR000876Small ribosomal subunit protein eS4Family
F [auth SE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth SE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth SE]IPR005824KOWDomain
G [auth SF]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth SF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth SF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth SF]IPR000235Small ribosomal subunit protein uS7Family
G [auth SF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
H [auth SH]IPR000554Small ribosomal subunit protein eS7Family
H [auth SH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth SI]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth SI]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth SI]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth SI]IPR001047Small ribosomal subunit protein eS8Family
J [auth SK]IPR037447Small ribosomal subunit protein eS10Family
J [auth SK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
J [auth SK]IPR005326Plectin/eS10, N-terminalDomain
L [auth SP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
L [auth SP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
L [auth SP]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
L [auth SP]IPR002222Small ribosomal subunit protein uS19Family
M [auth SQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
M [auth SQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth SQ]IPR000754Small ribosomal subunit protein uS9Family
M [auth SQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth SR]IPR001210Small ribosomal subunit protein eS17Family
N [auth SR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
N [auth SR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
O [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
O [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
O [auth SS]IPR001892Small ribosomal subunit protein uS13Family
O [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
P [auth ST]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
P [auth ST]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
P [auth ST]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
P [auth ST]IPR001266Small ribosomal subunit protein eS19Family
Q [auth SU]IPR027486Small ribosomal subunit protein uS10 domainDomain
Q [auth SU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
Q [auth SU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
Q [auth SU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
Q [auth SU]IPR001848Small ribosomal subunit protein uS10Family
R [auth SV]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
R [auth SV]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
R [auth SV]IPR001931Small ribosomal subunit protein eS21Family
S [auth SX]IPR006032Small ribosomal subunit protein uS12Family
S [auth SX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth SX]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
T [auth Sa]IPR047864Ribosomal protein eS26, conserved siteConserved Site
T [auth Sa]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
T [auth Sa]IPR000892Small ribosomal subunit protein eS26Family
U [auth Sc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
U [auth Sc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
U [auth Sc]IPR000289Small ribosomal subunit protein eS28Family
V [auth Sd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
V [auth Sd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
V [auth Sd]IPR001209Small ribosomal subunit protein uS14Family
V [auth Sd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
W [auth Sg]IPR019775WD40 repeat, conserved siteConserved Site
W [auth Sg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
W [auth Sg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
W [auth Sg]IPR020472G-protein beta WD-40 repeatRepeat
W [auth Sg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth Sg]IPR001680WD40 repeatRepeat
X [auth SC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
X [auth SC]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
X [auth SC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
X [auth SC]IPR000851Small ribosomal subunit protein uS5Family
X [auth SC]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
X [auth SC]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
X [auth SC]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
Y [auth SG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
Y [auth SG]IPR001377Small ribosomal subunit protein eS6Family
Y [auth SG]IPR014401Small ribosomal subunit protein eS6-likeFamily
Z [auth SJ]IPR002942RNA-binding S4 domainDomain
Z [auth SJ]IPR022801Small ribosomal subunit protein uS4Family
Z [auth SJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
Z [auth SJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
Z [auth SJ]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
Z [auth SJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AA [auth SM]IPR000530Small ribosomal subunit protein eS12Family
AA [auth SM]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AA [auth SM]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
AA [auth SM]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BA [auth SN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth SN]IPR000589Small ribosomal subunit protein uS15Family
BA [auth SN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
BA [auth SN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
DA [auth SW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
DA [auth SW]IPR000630Small ribosomal subunit protein uS8Family
DA [auth SW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
EA [auth SY]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
EA [auth SY]IPR001976Small ribosomal subunit protein eS24Family
EA [auth SY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth SY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
FA [auth SZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
FA [auth SZ]IPR004977Small ribosomal subunit protein eS25Family
GA [auth Sb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
GA [auth Sb]IPR000592Small ribosomal subunit protein eS27Family
GA [auth Sb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth Se]IPR019954Ubiquitin conserved siteConserved Site
HA [auth Se]IPR000626Ubiquitin-like domainDomain
HA [auth Se]IPR006846Small ribosomal subunit protein eS30Family
HA [auth Se]IPR039415Ubiquitin-like protein FUBIDomain
HA [auth Se]IPR019956Ubiquitin domainDomain
HA [auth Se]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IA [auth Sf]IPR019954Ubiquitin conserved siteConserved Site
IA [auth Sf]IPR050158Ubiquitin and ubiquitin-likeFamily
IA [auth Sf]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth Sf]IPR000626Ubiquitin-like domainDomain
IA [auth Sf]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
IA [auth Sf]IPR002906Small ribosomal subunit protein eS31Domain
IA [auth Sf]IPR019956Ubiquitin domainDomain
IA [auth Sf]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
JA [auth JD]IPR006630La-type HTH domainDomain
JA [auth JD]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
JA [auth JD]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
JA [auth JD]IPR006607LARP1-like, DM15 repeatRepeat
JA [auth JD]IPR045180La domain containing proteinFamily
K [auth SL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth SL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth SL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth SL]IPR000266Small ribosomal subunit protein uS17Family
K [auth SL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
CA [auth SO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
CA [auth SO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
CA [auth SO]IPR001971Small ribosomal subunit protein uS11Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth Ln]PharosP62945
C [auth SA]PharosP08865
E [auth SD]PharosP23396
F [auth SE]PharosP62701
G [auth SF]PharosP46782
H [auth SH]PharosP62081
I [auth SI]PharosP62241
J [auth SK]PharosP46783
L [auth SP]PharosP62841
M [auth SQ]PharosP62249
N [auth SR]PharosP08708
O [auth SS]PharosP62269
P [auth ST]PharosP39019
Q [auth SU]PharosP60866
R [auth SV]PharosP63220
S [auth SX]PharosP62266
T [auth Sa]PharosP62854
U [auth Sc]PharosP62857
V [auth Sd]PharosP62273
W [auth Sg]PharosP63244
X [auth SC]PharosP15880
Y [auth SG]PharosP62753
Z [auth SJ]PharosP46781
AA [auth SM]PharosP25398
BA [auth SN]PharosP62277
DA [auth SW]PharosP62244
EA [auth SY]PharosP62847
FA [auth SZ]PharosP62851
GA [auth Sb]PharosP42677
HA [auth Se]PharosP62861
IA [auth Sf]PharosP62979
JA [auth JD]PharosQ6PKG0
K [auth SL]PharosP62280
CA [auth SO]PharosP62263