Download MendeleyCrystal structure of a novel cyclase (pfam04199).
Nocek, B., Skarina, T., Brown, G., Joachimiak, A., Savchenko, A., Yakunin, A.To be published.
5IBZ
Crystal structure of a novel cyclase (pfam04199).
- PDB DOI: https://doi.org/10.2210/pdb5IBZ/pdb
- Classification: LYASE
- Organism(s): uncultured organism
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-02-22 Released: 2017-08-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.61 Å
- R-Value Free: 0.161
- R-Value Work: 0.133
- R-Value Observed: 0.134
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 323 | uncultured organism | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0G3FEK2 (uncultured organism) Explore A0A0G3FEK2 Go to UniProtKB: A0A0G3FEK2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0G3FEK2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | H [auth C] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| UVW Query on UVW | E [auth A], F [auth B], G [auth C], I [auth D] | ACETYLPHOSPHATE C2 H5 O5 P LIPOUNRJVLNBCD-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.61 Å
- R-Value Free: 0.161
- R-Value Work: 0.133
- R-Value Observed: 0.134
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.508 | α = 90 |
| b = 120.618 | β = 90 |
| c = 148.822 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2017-08-09 Deposition Author(s): Nocek, B., Skarina, T., Brown, G., Joachimiak, A., Savchenko, A., Yakunin, A.
Revision History (Full details and data files)
- Version 1.0: 2017-08-09
Type: Initial release - Version 1.1: 2024-11-13
Changes: Data collection, Database references, Structure summary
