1K32
Crystal structure of the tricorn protease
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Tricorn protease domain 2 | 8037768 | 3000315 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Tricorn protease N-terminal domain | 8037767 | 3000291 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PDZ domain-like | 8037766 | 3000388 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Tail specific protease PDZ domain | 8025387 | 4002827 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Tricorn protease N-terminal domain | 8025388 | 4003126 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Tricorn protease domain 2 | 8025389 | 4003140 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Tail specific protease, catalytic domain | 8025390 | 4003564 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PDZ domain-like | 8037766 | 3000388 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Tricorn protease N-terminal domain | 8037767 | 3000291 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Tricorn protease domain 2 | 8037768 | 3000315 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PDZ domain-like | 8037766 | 3000388 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Tricorn protease domain 2 | 8037768 | 3000315 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Tricorn protease N-terminal domain | 8037767 | 3000291 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Tricorn protease N-terminal domain | 8037767 | 3000291 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PDZ domain-like | 8037766 | 3000388 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Tricorn protease domain 2 | 8037768 | 3000315 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Tricorn protease N-terminal domain | 8037767 | 3000291 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Tricorn protease domain 2 | 8037768 | 3000315 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | PDZ domain-like | 8037766 | 3000388 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Tricorn protease domain 2 | 8037768 | 3000315 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Tricorn protease N-terminal domain | 8037767 | 3000291 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ClpP/crotonase | 8037769 | 3000033 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | PDZ domain-like | 8037766 | 3000388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Tricorn_PDZ | e1k32C4 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: Tricorn_PDZ | ECOD (1.6) |
C | DPPIV_N_1 | e1k32C2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
C | DPPIV_N | e1k32C5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DPPIV_N | ECOD (1.6) |
C | Tricorn_C1 | e1k32C3 | A: alpha bundles | X: Tail specific protease helical domain (From Topology) | H: Tail specific protease helical domain (From Topology) | T: Tail specific protease helical domain | F: Tricorn_C1 | ECOD (1.6) |
C | Peptidase_S41 | e1k32C1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Peptidase_S41 | ECOD (1.6) |
A | Tricorn_PDZ | e1k32A1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: Tricorn_PDZ | ECOD (1.6) |
A | DPPIV_N_1 | e1k32A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
A | DPPIV_N | e1k32A3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DPPIV_N | ECOD (1.6) |
A | Tricorn_C1 | e1k32A5 | A: alpha bundles | X: Tail specific protease helical domain (From Topology) | H: Tail specific protease helical domain (From Topology) | T: Tail specific protease helical domain | F: Tricorn_C1 | ECOD (1.6) |
A | Peptidase_S41 | e1k32A6 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Peptidase_S41 | ECOD (1.6) |
B | Tricorn_PDZ | e1k32B4 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: Tricorn_PDZ | ECOD (1.6) |
B | DPPIV_N_1 | e1k32B2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
B | DPPIV_N | e1k32B5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DPPIV_N | ECOD (1.6) |
B | Tricorn_C1 | e1k32B3 | A: alpha bundles | X: Tail specific protease helical domain (From Topology) | H: Tail specific protease helical domain (From Topology) | T: Tail specific protease helical domain | F: Tricorn_C1 | ECOD (1.6) |
B | Peptidase_S41 | e1k32B1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Peptidase_S41 | ECOD (1.6) |
D | Tricorn_PDZ | e1k32D2 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: Tricorn_PDZ | ECOD (1.6) |
D | DPPIV_N_1 | e1k32D5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
D | DPPIV_N | e1k32D1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DPPIV_N | ECOD (1.6) |
D | Tricorn_C1 | e1k32D4 | A: alpha bundles | X: Tail specific protease helical domain (From Topology) | H: Tail specific protease helical domain (From Topology) | T: Tail specific protease helical domain | F: Tricorn_C1 | ECOD (1.6) |
D | Peptidase_S41 | e1k32D3 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Peptidase_S41 | ECOD (1.6) |
E | Tricorn_PDZ | e1k32E3 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: Tricorn_PDZ | ECOD (1.6) |
E | DPPIV_N_1 | e1k32E1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
E | DPPIV_N | e1k32E5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DPPIV_N | ECOD (1.6) |
E | Tricorn_C1 | e1k32E2 | A: alpha bundles | X: Tail specific protease helical domain (From Topology) | H: Tail specific protease helical domain (From Topology) | T: Tail specific protease helical domain | F: Tricorn_C1 | ECOD (1.6) |
E | Peptidase_S41 | e1k32E4 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Peptidase_S41 | ECOD (1.6) |
F | Tricorn_PDZ | e1k32F2 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: Tricorn_PDZ | ECOD (1.6) |
F | DPPIV_N_1 | e1k32F1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
F | DPPIV_N | e1k32F5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DPPIV_N | ECOD (1.6) |
F | Tricorn_C1 | e1k32F3 | A: alpha bundles | X: Tail specific protease helical domain (From Topology) | H: Tail specific protease helical domain (From Topology) | T: Tail specific protease helical domain | F: Tricorn_C1 | ECOD (1.6) |
F | Peptidase_S41 | e1k32F4 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Peptidase_S41 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03572 | Peptidase family S41 (Peptidase_S41) | Peptidase family S41 | - | Family | |
PF14684 | Tricorn protease C1 domain (Tricorn_C1) | Tricorn protease C1 domain | This domain is the C1 core domain of tricorn protease. This is a mixed alpha-beta domain [1]. | Domain | |
PF14685 | Tricorn protease PDZ domain (Tricorn_PDZ) | Tricorn protease PDZ domain | This domain is the PDZ domain of tricorn protease [1]. | Domain | |
PF07676 | WD40-like Beta Propeller Repeat (PD40) | WD40-like Beta Propeller Repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
tricorn protease |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005151 | Tail specific protease | Domain | |
IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
IPR011659 | WD40-like beta propeller | Repeat | |
IPR028204 | Tricorn protease C1 domain | Domain | |
IPR029414 | Tricorn protease, PDZ domain | Domain | |
IPR012393 | Tricorn protease | Family | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR036034 | PDZ superfamily | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
tricorn protease M-CSA #808 | The tricorn protease is the core of a proteolytic system identified in the model organism Thermoplasma acidophilum. This complex functions to degrade the 7-9 residue peptides that are produced by the proteasome-mediated degradation of cellular proteins. The basic functional unit of the tricorn protease is a homohexamer of the 121 kDa subunit; however electron microscopy studies indicate that 20 copies of this 720 kDa hexamer can assemble further in vivo to form a giant 14.6 MDa icosahedral capsid. | Defined by 4 residues: HIS:A-720 [auth A-746]GLY:A-892 [auth A-918]SER:A-939 [auth A-965]ASP:A-940 [auth A-966] | EC: 3.4.21 (PDB Primary Data) |