2EX8
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2ex8a_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | Dac-like | DD-carboxypeptidase DacB | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_S13_2nd | e2ex8A1 | A: beta complex topology | X: Inserted beta sandwich domain in Dac-like proteins (From Topology) | H: Inserted beta sandwich domain in Dac-like proteins (From Topology) | T: Inserted beta sandwich domain in Dac-like proteins | F: Peptidase_S13_2nd | ECOD (1.6) |
A | Peptidase_S13_3rd | e2ex8A2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S13_3rd | ECOD (1.6) |
A | Peptidase_S13_4th | e2ex8A3 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S13_4th | ECOD (1.6) |
A | Peptidase_S13_1st | e2ex8A4 | A: a/b three-layered sandwiches | X: DTD-like | H: Inserted a+b domain in Dac-like proteins (From Topology) | T: Inserted a+b domain in Dac-like proteins | F: Peptidase_S13_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
A | 3.50.80.20 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR000667 | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | Family |