2J7N
Structure of the RNAi polymerase from Neurospora crassa
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8055682 | 3001330 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8055683 | 3001330 | SCOP2B (2022-06-29) |
A | SCOP2 Family | RdRP-like | 8046930 | 4005374 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Two-barrel nucleic acid polymerases | 8055682 | 3001330 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Two-barrel nucleic acid polymerases | 8055683 | 3001330 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | RdRP_3rd | e2j7nB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RdRP_3rd | ECOD (1.6) |
B | RdRP_2nd | e2j7nB3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RdRP_2nd | ECOD (1.6) |
B | RdRP_4th | e2j7nB4 | A: alpha complex topology | X: RNAi polymerase helical domain (From Topology) | H: RNAi polymerase helical domain (From Topology) | T: RNAi polymerase helical domain | F: RdRP_4th | ECOD (1.6) |
B | RdRP_1st | e2j7nB1 | A: a+b complex topology | X: RNAi polymerase N-terminal domain (From Topology) | H: RNAi polymerase N-terminal domain (From Topology) | T: RNAi polymerase N-terminal domain | F: RdRP_1st | ECOD (1.6) |
A | RdRP_3rd | e2j7nA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RdRP_3rd | ECOD (1.6) |
A | RdRP_2nd | e2j7nA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RdRP_2nd | ECOD (1.6) |
A | RdRP_4th | e2j7nA4 | A: alpha complex topology | X: RNAi polymerase helical domain (From Topology) | H: RNAi polymerase helical domain (From Topology) | T: RNAi polymerase helical domain | F: RdRP_4th | ECOD (1.6) |
A | RdRP_1st | e2j7nA1 | A: a+b complex topology | X: RNAi polymerase N-terminal domain (From Topology) | H: RNAi polymerase N-terminal domain (From Topology) | T: RNAi polymerase N-terminal domain | F: RdRP_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.8.790 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
A | 1.10.8.790 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05183 | RNA dependent RNA polymerase (RdRP) | RNA dependent RNA polymerase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007855 | RNA-dependent RNA polymerase, eukaryotic-type | Family |