2W6T
Structures of P. aeruginosa FpvA bound to heterologous pyoverdines: FpvA-Pvd(DSM50106)-Fe complex
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Protein Modification Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Porins | 8057240 | 3000224 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | STN domain-like | 8057237 | 3002388 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Porins | 8057240 | 3000224 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | STN domain-like | 8057237 | 3002388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TonB_dep_Rec_1 | e2w6tA3 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: TonB_dep_Rec_1 | ECOD (1.6) |
A | STN | e2w6tA2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: N0 domain in phage tail proteins and secretins (From Topology) | T: N0 domain in phage tail proteins and secretins | F: STN | ECOD (1.6) |
A | Plug | e2w6tA1 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: Plug | ECOD (1.6) |
B | TonB_dep_Rec_1 | e2w6tB2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: TonB_dep_Rec_1 | ECOD (1.6) |
B | STN | e2w6tB3 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: N0 domain in phage tail proteins and secretins (From Topology) | T: N0 domain in phage tail proteins and secretins | F: STN | ECOD (1.6) |
B | Plug | e2w6tB4 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: Plug | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.55.50.30 | Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | CATH (4.3.0) | |
A | 2.170.130.10 | Mainly Beta | Beta Complex | Ferric Hydroxamate Uptake Protein | Chain A, domain 1 | CATH (4.3.0) |
A | 2.40.170.20 | Mainly Beta | Beta Barrel | Maltoporin | Chain A | CATH (4.3.0) |
B | 3.55.50.30 | Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | CATH (4.3.0) | |
B | 2.170.130.10 | Mainly Beta | Beta Complex | Ferric Hydroxamate Uptake Protein | Chain A, domain 1 | CATH (4.3.0) |
B | 2.40.170.20 | Mainly Beta | Beta Barrel | Maltoporin | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07660 | Secretin and TonB N terminus short domain (STN) | Secretin and TonB N terminus short domain | - | Family | |
PF00593 | TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel) | TonB dependent receptor-like, beta-barrel | This entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. | Domain | |
PF07715 | TonB-dependent Receptor Plug Domain (Plug) | TonB-dependent Receptor Plug Domain | The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
FERRIPYOVERDINE RECEPTOR |
| |||
PYOVERDINE | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039426 | TonB-dependent receptor-like | Family | |
IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily | |
IPR010917 | TonB-dependent receptor, conserved site | Conserved Site | |
IPR010105 | TonB-dependent siderophore receptor | Family | |
IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily | |
IPR012910 | TonB-dependent receptor, plug domain | Domain | |
IPR011662 | Secretin/TonB, short N-terminal domain | Domain | |
IPR000531 | TonB-dependent receptor-like, beta-barrel | Domain |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
DSN | AA0195 , AA0624 :  D-serine (Ser) MOD:00202 , D-serine MOD:00891 , D-serine (Cys) MOD:00892 , 2-(L-cystein-S-yl)-D-serine MOD:01987 | :  |
FH7 | Parent Component: LYS :  AA0195 , AA0624 | |
FHO | Parent Component: LYS :  AA0195 , AA0624 | |
ORN | Parent Component: ALA :  AA0195 , AA0624 :  D-serine (Ser) MOD:00202 , D-serine MOD:00891 , D-serine (Cys) MOD:00892 , 2-(L-cystein-S-yl)-D-serine MOD:01987 |