2WYD
The quorum quenching N-acyl homoserine lactone acylase PvdQ in complex with dodecanoic acid
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.439.10 | Mainly Alpha | Orthogonal Bundle | Penicillin Amidohydrolase | domain 1 | CATH (4.3.0) |
B | 3.60.20.10 | Alpha Beta | 4-Layer Sandwich | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | Aminohydrolase, N-terminal nucleophile (Ntn) domain | CATH (4.3.0) |
B | 2.30.120.10 | Mainly Beta | Roll | Penicillin G acylase, beta-roll domain | Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | CATH (4.3.0) |
B | 1.10.1400.10 | Mainly Alpha | Orthogonal Bundle | Penicillin amidase (Acylase) alpha subunit, N-terminal domain | Aminohydrolase, alpha-helical knob region | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01804 | Penicillin amidase (Penicil_amidase) | Penicillin amidase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029055 | Nucleophile aminohydrolases, N-terminal | Homologous Superfamily | |
IPR002692 | Penicillin/GL-7-ACA/AHL/aculeacin-A acylase | Family | |
IPR023343 | Penicillin amidase type, domain 1 | Homologous Superfamily | |
IPR043147 | Penicillin amidase type, A-knob | Homologous Superfamily | |
IPR043146 | Penicillin amidase type, N-terminal domain, B-knob | Homologous Superfamily | |
IPR014395 | Penicillin/GL-7-ACA/AHL acylase | Family | |
IPR029055 | Nucleophile aminohydrolases, N-terminal | Homologous Superfamily | |
IPR002692 | Penicillin/GL-7-ACA/AHL/aculeacin-A acylase | Family | |
IPR023343 | Penicillin amidase type, domain 1 | Homologous Superfamily | |
IPR043147 | Penicillin amidase type, A-knob | Homologous Superfamily | |
IPR043146 | Penicillin amidase type, N-terminal domain, B-knob | Homologous Superfamily | |
IPR014395 | Penicillin/GL-7-ACA/AHL acylase | Family |