2YDR
CpOGA D298N in complex with p53-derived O-GlcNAc peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Hyaluronidase post-catalytic domain-like | 8038622 | 3001475 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-N-acetylhexosaminidase-like domain | 8038626 | 3000192 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8038623 | 3000313 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NagJ_C | e2ydrA9 | A: alpha bundles | X: Hyaluronidase domain-like | H: Hyaluronidase post-catalytic domain-like (From Topology) | T: Hyaluronidase post-catalytic domain-like | F: NagJ_C | ECOD (1.6) |
A | NAGidase | e2ydrA8 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: NAGidase | ECOD (1.6) |
A | Glyco_hydro_20b | e2ydrA7 | A: mixed a+b and a/b | X: Zincin-like | H: beta-N-acetylhexosaminidase-like domain (From Topology) | T: beta-N-acetylhexosaminidase-like domain | F: Glyco_hydro_20b | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.379.10 | Alpha Beta | 2-Layer Sandwich | Chitobiase | domain 2 | CATH (4.3.0) |
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 1.20.58.460 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21774 | Hyaluronidase post-catalytic domain-like (NagJ_C) | Hyaluronidase post-catalytic domain-like | This domain is located at the C-terminus of proteins that are members of family 84 glycoside hydrolases.These enzymes directly hydrolyse O-GlcNAcylated peptides/proteins. This domain folds into a five helical bundle with up-and-down topology. It may ... | Domain | |
PF02838 | Glycosyl hydrolase family 20, domain 2 (Glyco_hydro_20b) | Glycosyl hydrolase family 20, domain 2 | This domain has a zincin-like fold. | Domain | |
PF07555 | beta-N-acetylglucosaminidase (NAGidase) | beta-N-acetylglucosaminidase | - | Family | |