4QTU
Structure of S. cerevisiae Bud23-Trm112 complex involved in formation of m7G1575 on 18S rRNA (SAM bound form)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trm112p | e4qtuA1 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: Trm112p | ECOD (1.6) |
C | Trm112p | e4qtuC1 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: Trm112p | ECOD (1.6) |
B | Methyltransf_11_1 | e4qtuB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_1 | ECOD (1.6) |
D | Methyltransf_11_1 | e4qtuD1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
C | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
D | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03966 | Trm112p-like protein (Trm112p) | Trm112p-like protein | The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA ... | Domain | |
PF08241 | Methyltransferase domain (Methyltransf_11) | Methyltransferase domain | Members of this family are SAM dependent methyltransferases. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039127 | Multifunctional methyltransferase subunit Trm112 | Family | |
IPR005651 | Trm112-like | Family | |
IPR022238 | 18S rRNA (guanine(1575)-N(7))-methyltransferase Bud23, C-terminal | Domain | |
IPR039769 | 18S rRNA (guanine(1575)-N(7))-methyltransferase Bud23-like | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR013216 | Methyltransferase type 11 | Domain |