5CQ9

Crystal structure of SopD2, a type III secreted virulence effector from Salmonella enterica

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyT3SS effector SopD-like 8045847 4004722 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyT3SS effector SopD-like 8091425 3002509 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyT3SS effector SopD-like 8091425 3002509 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASopD_2nde5cq9A2 A: alpha arraysX: SopD C-terminal domain (From Topology)H: SopD C-terminal domain (From Topology)T: SopD C-terminal domainF: SopD_2ndECOD (1.6)
ASopD_1ste5cq9A1 A: a+b two layersX: Type III secretory system chaperone-likeH: N-terminal domain of secreted effector protein sifA (From Topology)T: N-terminal domain of secreted effector protein sifAF: SopD_1stECOD (1.6)
BSopD_2nde5cq9B1 A: alpha arraysX: SopD C-terminal domain (From Topology)H: SopD C-terminal domain (From Topology)T: SopD C-terminal domainF: SopD_2ndECOD (1.6)
BSopD_1ste5cq9B2 A: a+b two layersX: Type III secretory system chaperone-likeH: N-terminal domain of secreted effector protein sifA (From Topology)T: N-terminal domain of secreted effector protein sifAF: SopD_1stECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Secreted effector protein sopD2-
C, D
11-mer peptide---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR022747Salmonella outer protein DFamily