5F6Z

Sandercyanin Fluorescent Protein purified from Sander vitreus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5f6zb_	All beta proteins	Lipocalins	Lipocalins	automated matches	automated matches	(Sander vitreus ) [TaxId: 283036 ],	SCOPe (2.08)
D	d5f6zd_	All beta proteins	Lipocalins	Lipocalins	automated matches	automated matches	(Sander vitreus ) [TaxId: 283036 ],	SCOPe (2.08)
A	d5f6za_	All beta proteins	Lipocalins	Lipocalins	automated matches	automated matches	(Sander vitreus ) [TaxId: 283036 ],	SCOPe (2.08)
C	d5f6zc_	All beta proteins	Lipocalins	Lipocalins	automated matches	automated matches	(Sander vitreus ) [TaxId: 283036 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Lipocalins	8096516	3001332	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Lipocalins	8096516	3001332	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Lipocalins	8096516	3001332	SCOP2B (2022-06-29)
C	SCOP2 Family	Retinol binding protein-like	8096515	4002493	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Lipocalins	8096516	3001332	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Lipocalin_2	e5f6zB1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: Lipocalin_2	ECOD (1.6)
D	Lipocalin_2	e5f6zD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: Lipocalin_2	ECOD (1.6)
A	Lipocalin_2	e5f6zA1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: Lipocalin_2	ECOD (1.6)
C	Lipocalin_2	e5f6zC1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: Lipocalin_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.128.20	Mainly Beta	Beta Barrel	Lipocalin	Calycin beta-barrel core domain	CATH (4.3.0)
D	2.40.128.20	Mainly Beta	Beta Barrel	Lipocalin	Calycin beta-barrel core domain	CATH (4.3.0)
A	2.40.128.20	Mainly Beta	Beta Barrel	Lipocalin	Calycin beta-barrel core domain	CATH (4.3.0)
C	2.40.128.20	Mainly Beta	Beta Barrel	Lipocalin	Calycin beta-barrel core domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08212	Lipocalin-like domain (Lipocalin_2)	Lipocalin-like domain	Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Sandercyanin Fluorescent Protein	binding pigment binding	primary metabolic process metabolic process lipid metabolic process response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR022271	Lipocalin, ApoD type	Family
A, B, C, D	IPR012674	Calycin	Homologous Superfamily
A, B, C, D	IPR003057	Invertebrate colouration protein	Family
A, B, C, D	IPR000566	Lipocalin/cytosolic fatty-acid binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.