5HR6
X-ray crystal structure of C118A RlmN with cross-linked tRNA purified from Escherichia coli
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRK11194 | e5hr6A1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PRK11194 | ECOD (1.6) |
A | Radical_SAM | e5hr6A2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Radical_SAM | ECOD (1.6) |
C [auth B] | PRK11194 | e5hr6B2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PRK11194 | ECOD (1.6) |
C [auth B] | Radical_SAM | e5hr6B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Radical_SAM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.530 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
C [auth B] | 1.10.150.530 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
C [auth B] | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain |
A, C [auth B] | PF21016 | Ribosomal RNA large subunit methyltransferase N-terminal domain (RlmN_N) | Ribosomal RNA large subunit methyltransferase N-terminal domain | This entry represents the N-terminal domain from the dual-specificity RNA methyltransferase RlmN. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR007197 | Radical SAM | Domain |
A, C [auth B] | IPR027492 | Dual-specificity RNA methyltransferase RlmN | Family |
A, C [auth B] | IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily |
A, C [auth B] | IPR040072 | Methyltransferase (Class A) | Family |
A, C [auth B] | IPR048641 | Dual-specificity RNA methyltransferase RlmN, N-terminal domain | Domain |
A, C [auth B] | IPR004383 | Ribosomal RNA large subunit methyltransferase RlmN/Cfr | Family |