5IJR
X-ray structure of neuropilin-1 b1 domain complexed with Arg-1 ligand.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5ijra_ | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) | B1 domain of neuropilin-1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5ijrb1 | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) | B1 domain of neuropilin-1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5ijrb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F5_F8_type_C | e5ijrA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C | ECOD (1.6) |
B | F5_F8_type_C | e5ijrB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR000859 | CUB domain | Domain | |
IPR022579 | Neuropilin, C-terminal | Domain | |
IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
IPR035914 | Spermadhesin, CUB domain superfamily | Homologous Superfamily | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR014648 | Neuropilin | Family | |
IPR050633 | Neuropilin/Multicopper Oxidase/Coagulation Factor | Family | |
IPR000998 | MAM domain | Domain |