5OSN
Crystal Structure of Bovine Enterovirus 2 determined with Serial Femtosecond X-ray Crystallography
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5osna_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | automated matches | (Enterovirus E ) [TaxId: 12064 ], | SCOPe (2.08) |
C | d5osnc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | automated matches | (Enterovirus E ) [TaxId: 12064 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rhv_5 | e5osnA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_5 | ECOD (1.6) |
B | Rhv_1 | e5osnB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_1 | ECOD (1.6) |
C | Rhv_3 | e5osnC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_3 | ECOD (1.6) |
D | Pico_P1A_N | e5osnD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Pico_P1A_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 4.10.80.10 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | Picornavirus coat protein VP4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22663 | Picornavirus coat protein (Rhv_5) | Picornavirus coat protein | This domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5]. | Domain | |
PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain | |
PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR003138 | Picornavirus coat protein VP4 | Family | |
IPR001676 | Picornavirus capsid | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR003138 | Picornavirus coat protein VP4 | Family | |
IPR001676 | Picornavirus capsid | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR003138 | Picornavirus coat protein VP4 | Family | |
IPR001676 | Picornavirus capsid | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR003138 | Picornavirus coat protein VP4 | Family | |
IPR001676 | Picornavirus capsid | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain |