8ED4
Structure of the complex between the arsenite oxidase and its native electron acceptor cytochrome c552 from Pseudorhizobium sp. str. NT-26
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
K [auth H] | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e8ed4A3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e8ed4A4 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e8ed4A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth C] | F_UNCLASSIFIED | e8ed4C3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth C] | F_UNCLASSIFIED | e8ed4C1 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth C] | F_UNCLASSIFIED | e8ed4C4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth E] | F_UNCLASSIFIED | e8ed4E2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth E] | F_UNCLASSIFIED | e8ed4E1 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth E] | F_UNCLASSIFIED | e8ed4E4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth G] | F_UNCLASSIFIED | e8ed4G3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth G] | F_UNCLASSIFIED | e8ed4G4 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth G] | F_UNCLASSIFIED | e8ed4G2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8ed4B1 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8ed4B2 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth D] | F_UNCLASSIFIED | e8ed4D2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth D] | F_UNCLASSIFIED | e8ed4D1 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth F] | F_UNCLASSIFIED | e8ed4F1 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth F] | F_UNCLASSIFIED | e8ed4F2 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth H] | F_UNCLASSIFIED | e8ed4H1 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth H] | F_UNCLASSIFIED | e8ed4H2 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth I] | F_UNCLASSIFIED | e8ed4I1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth J] | F_UNCLASSIFIED | e8ed4J1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth K] | F_UNCLASSIFIED | e8ed4K1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: F_UNCLASSIFIED | ECOD (1.6) |
L | F_UNCLASSIFIED | e8ed4L1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth C], G [auth E], J [auth G] | PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ... | Domain |
A, D [auth C], G [auth E], J [auth G] | PF18465 | Rieske 3Fe-4S (Rieske_3) | Rieske 3Fe-4S | This domain is comprised of the iron-sulphur cluster and Rieske subunit found in the large subunit of arsenite oxidase. Arsenite oxidase is a 100 kDa molybdenum- and iron-sulfur-containing protein located on the outer surface of the inner membrane of ... | Domain |
A, D [auth C], G [auth E], J [auth G] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family |
B, E [auth D], H [auth F], K [auth H] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
C [auth I], F [auth J], I [auth K], L | PF00034 | Cytochrome c (Cytochrom_C) | Cytochrome c | The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, D [auth C], G [auth E], J [auth G] | AroA | |||
B, E [auth D], H [auth F], K [auth H] | AroB | - | - | |
C [auth I], F [auth J], I [auth K], L | C-type cytochrome c552 | - | - |