8SYL

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
I [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
U [auth u]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
HA [auth L]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
IA [auth M]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
LA [auth P]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
NA [auth R]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
RA [auth V]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
WA [auth 1]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
YA [auth 3]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
AB [auth 5]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
DB [auth 8]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
J [auth j]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
K [auth k]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
L [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
N [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
O [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
Q [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
BA [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
BA [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
CA [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
DA [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
EA [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
FA [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
FA [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
JA [auth N]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
KA [auth O]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
MA [auth Q]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
OA [auth S]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
PA [auth T]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
QA [auth U]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
SA [auth W]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
TA [auth X]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
UA [auth Y]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
VA [auth Z]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
XA [auth 2]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
ZA [auth 4]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
CB [auth 7]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
HA [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
HA [auth L]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
IA [auth M]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
IA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
LA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
LA [auth P]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
NA [auth R]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
RA [auth V]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
WA [auth 1]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
YA [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AB [auth 5]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
DB [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
AA [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
BA [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
BA [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
BA [auth C]PF07650KH domain (KH_2)KH domain- Domain
BA [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
CA [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
CA [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CA [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
DA [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
DA [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DA [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
EA [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
EA [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
EA [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
FA [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
GA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
GA [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
JA [auth N]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
JA [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
KA [auth O]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
KA [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
MA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
OA [auth S]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
OA [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PA [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PA [auth T]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
QA [auth U]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
QA [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
SA [auth W]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
SA [auth W]PF00467KOW motif (KOW)KOW motif- Family
TA [auth X]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
UA [auth Y]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
VA [auth Z]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
XA [auth 2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
ZA [auth 4]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BB [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
CB [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S Ribosomal RNA---
D [auth d]30S ribosomal protein S4
H [auth h]30S ribosomal protein S8
I [auth i]30S ribosomal protein S9
M [auth m]30S ribosomal protein S13
U [auth u]30S ribosomal protein S21
HA [auth L]50S ribosomal protein L13
IA [auth M]50S ribosomal protein L14
LA [auth P]50S ribosomal protein L17
NA [auth R]50S ribosomal protein L19
RA [auth V]50S ribosomal protein L23
WA [auth 1]50S ribosomal protein L29
YA [auth 3]50S ribosomal protein L31
AB [auth 5]50S ribosomal protein L33
DB [auth 8]50S ribosomal protein L36
J [auth j]30S ribosomal protein S10
K [auth k]30S ribosomal protein S11
L [auth l]30S ribosomal protein S12
N [auth n]30S ribosomal protein S14
O [auth o]30S ribosomal protein S15
P [auth p]30S ribosomal protein S16
Q [auth q]30S ribosomal protein S17
R [auth r]30S ribosomal protein S18
S [auth s]30S ribosomal protein S19
B [auth b]30S ribosomal protein S2
T [auth t]30S ribosomal protein S20
V [auth w],
X [auth y]
phenylalanine tRNA---
W [auth x]P-site initiator tRNA---
Y [auth v]M-F-Stop mRNA---
Z [auth A]23S Ribosomal RNA---
AA [auth B]5S Ribosomal RNA---
BA [auth C]50S ribosomal protein L2
CA [auth D]50S ribosomal protein L3
DA [auth E]50S ribosomal protein L4
C [auth c]30S ribosomal protein S3
EA [auth F]50S ribosomal protein L5
FA [auth G]50S ribosomal protein L6
GA [auth H]50S ribosomal protein L9
JA [auth N]50S ribosomal protein L15
KA [auth O]50S ribosomal protein L16
MA [auth Q]50S ribosomal protein L18
OA [auth S]50S ribosomal protein L20
PA [auth T]Ribosomal protein L21
QA [auth U]50S ribosomal protein L22
SA [auth W]50S ribosomal protein L24
TA [auth X]50S ribosomal protein L25
UA [auth Y]50S ribosomal protein L27
VA [auth Z]50S ribosomal protein L28
XA [auth 2]50S ribosomal protein L30
E [auth e]30S ribosomal protein S5
ZA [auth 4]50S ribosomal protein L32
BB [auth 6]50S ribosomal protein L34
CB [auth 7]50S ribosomal protein L35
F [auth f]30S ribosomal protein S6
G [auth g]30S ribosomal protein S7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
U [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth u]IPR001911Small ribosomal subunit protein bS21Family
HA [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
HA [auth L]IPR005822Large ribosomal subunit protein uL13Family
HA [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
HA [auth L]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
IA [auth M]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
IA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IA [auth M]IPR000218Large ribosomal subunit protein uL14Family
IA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
LA [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
LA [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
LA [auth P]IPR000456Large ribosomal subunit protein bL17Family
NA [auth R]IPR001857Large ribosomal subunit protein bL19Family
NA [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
NA [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
NA [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
RA [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
RA [auth V]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
RA [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
WA [auth 1]IPR050063Universal ribosomal protein uL29Family
WA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
WA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
WA [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
YA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
YA [auth 3]IPR027491Large ribosomal subunit protein bL31 type AFamily
YA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
YA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
AB [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AB [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AB [auth 5]IPR001705Large ribosomal subunit protein bL33Family
AB [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
DB [auth 8]IPR000473Large ribosomal subunit protein bL36Family
DB [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
J [auth j]IPR001848Small ribosomal subunit protein uS10Family
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
BA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
BA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
BA [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
BA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
BA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
BA [auth C]IPR002171Large ribosomal subunit protein uL2Family
CA [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
CA [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
CA [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CA [auth D]IPR000597Large ribosomal subunit protein uL3Family
DA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
DA [auth E]IPR002136Large ribosomal subunit protein uL4Family
DA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EA [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
EA [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
EA [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
EA [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
EA [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
EA [auth F]IPR002132Large ribosomal subunit protein uL5Family
FA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
FA [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
FA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
FA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
FA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
GA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
GA [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
GA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
GA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
GA [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
GA [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
GA [auth H]IPR000244Large ribosomal subunit protein bL9Family
JA [auth N]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
JA [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth N]IPR030878Large ribosomal subunit protein uL15Family
JA [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
JA [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KA [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
KA [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
KA [auth O]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
KA [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
KA [auth O]IPR047873Large ribosomal subunit protein uL16Family
MA [auth Q]IPR005484Large ribosomal subunit protein uL18Family
MA [auth Q]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
OA [auth S]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
OA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
OA [auth S]IPR005813Large ribosomal subunit protein bL20Family
PA [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
PA [auth T]IPR001787Large ribosomal subunit protein bL21Family
PA [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
PA [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
QA [auth U]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
QA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
QA [auth U]IPR001063Large ribosomal subunit protein uL22Family
QA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
QA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
SA [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth W]IPR003256Large ribosomal subunit protein uL24Family
SA [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
SA [auth W]IPR005824KOWDomain
SA [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
TA [auth X]IPR020055Ribosomal protein bL25, short-formFamily
TA [auth X]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
TA [auth X]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
TA [auth X]IPR050070Bacterial ribosomal protein bL25Family
TA [auth X]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
UA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
UA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
VA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
VA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
VA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
VA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
XA [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
XA [auth 2]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
XA [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
XA [auth 2]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
ZA [auth 4]IPR002677Large ribosomal subunit protein bL32Family
ZA [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZA [auth 4]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
BB [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BB [auth 6]IPR000271Large ribosomal subunit protein bL34Family
CB [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
CB [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CB [auth 7]IPR001706Large ribosomal subunit protein bL35Family
CB [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth a]2MG Parent Component: G

A [auth a]4OC Parent Component: C

A [auth a]5MC Parent Component: C

A [auth a]G7M Parent Component: G

A [auth a]MA6 Parent Component: A

A [auth a]PSU Parent Component: U

A [auth a]UR3 Parent Component: U

K [auth k]IAS
L [auth l]D2T Parent Component: ASP

V [auth w],
X [auth y]
4SU Parent Component: U

V [auth w],
X [auth y]
5MU Parent Component: U

V [auth w],
X [auth y]
7MG Parent Component: G

V [auth w],
X [auth y]
MIA Parent Component: A

V [auth w],
X [auth y]
PSU Parent Component: U

W [auth x]4SU Parent Component: U

W [auth x]5MC Parent Component: C

W [auth x]5MU Parent Component: U

W [auth x]PSU Parent Component: U

Z [auth A]1MG Parent Component: G

Z [auth A]2MA Parent Component: A

Z [auth A]2MG Parent Component: G

Z [auth A]3TD Parent Component: U

Z [auth A]5MC Parent Component: C

Z [auth A]5MU Parent Component: U

Z [auth A]6MZ Parent Component: A

Z [auth A]G7M Parent Component: G

Z [auth A]H2U Parent Component: U

Z [auth A]OMC Parent Component: C

Z [auth A]OMG Parent Component: G

Z [auth A]OMU Parent Component: U

Z [auth A]PSU Parent Component: U

CA [auth D]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
KA [auth O]4D4 Parent Component: ARG

RESIDAA0071

KA [auth O]MS6 RESIDAA0071