X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1NOXPDB ENTRY 1NOX

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.5pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.1743

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44α = 90
b = 92.5β = 93
c = 102.5γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray295AREA DETECTORXUONG-HAMLIN MULTIWIREMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9520950.0620.062252520
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.11.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NOX1.9520445522359950.170.180.24RANDOM26.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor18.8
p_staggered_tor15.9
p_planar_tor4.7
p_scangle_it3.083
p_mcangle_it2.401
p_scbond_it2.002
p_mcbond_it1.625
p_singtor_nbd0.279
p_multtor_nbd0.228
p_xyhbond_nbd0.145
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor18.8
p_staggered_tor15.9
p_planar_tor4.7
p_scangle_it3.083
p_mcangle_it2.401
p_scbond_it2.002
p_mcbond_it1.625
p_singtor_nbd0.279
p_multtor_nbd0.228
p_xyhbond_nbd0.145
p_chiral_restr0.141
p_angle_d0.04
p_planar_d0.038
p_plane_restr0.028
p_bond_d0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6708
Nucleic Acid Atoms
Solvent Atoms320
Heterogen Atoms124

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
UCSD-systemdata reduction
UCSD-systemdata scaling