1QV7

HORSE LIVER ALCOHOL DEHYDROGENASE HIS51GLN/LYS228ARG MUTANT COMPLEXED WITH NAD+ AND 2,3-DIFLUOROBENZYL ALCOHOL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HLD 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1dialysis727850 mM ammonium N-[tris(hydroxymethyl)methyl)]-2-aminoethanesulfonate buffer, 1 mM NAD+, 10 mM 2,3-difluorobenzyl alcohol, 2-methyl-2,4-pentanediol, pH 7.0, dialysis, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
2.3748.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.05α = 91.61
b = 50.962β = 103.03
c = 92.466γ = 109.86
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH1998-08-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7111.030MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82095.10.110.117.31.95679186791818.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.991.90.382.722.068849

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1hld1.8206298262982160895.190.17840.178450.177320.22205RANDOM21.007
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.36-0.960.660.730.49-1.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.667
r_scangle_it4.982
r_dihedral_angle_1_deg4.747
r_scbond_it2.997
r_angle_refined_deg1.825
r_mcangle_it1.802
r_angle_other_deg1.49
r_mcbond_it1.033
r_symmetry_hbond_refined0.296
r_symmetry_vdw_other0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.667
r_scangle_it4.982
r_dihedral_angle_1_deg4.747
r_scbond_it2.997
r_angle_refined_deg1.825
r_mcangle_it1.802
r_angle_other_deg1.49
r_mcbond_it1.033
r_symmetry_hbond_refined0.296
r_symmetry_vdw_other0.25
r_nbd_refined0.22
r_nbd_other0.209
r_symmetry_vdw_refined0.148
r_xyhbond_nbd_refined0.144
r_chiral_restr0.11
r_xyhbond_nbd_other0.084
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5572
Nucleic Acid Atoms
Solvent Atoms489
Heterogen Atoms112

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
AMoREphasing