1XRG

Conserved hypothetical protein from Clostridium thermocellum Cth-2968


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.629130 v/v% PEG 400, 0.1M HEPES, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.5150.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.436α = 90
b = 80.436β = 90
c = 137.202γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID0.969APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1301000.07230510
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.181000.169

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.219.8972657982599.640.1940.193530.19250.2248thin shells22.273
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.019-0.009-0.0190.028
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.088
r_dihedral_angle_3_deg13.214
r_dihedral_angle_1_deg6.47
r_scangle_it4.093
r_dihedral_angle_4_deg4.039
r_mcangle_it3.675
r_scbond_it2.868
r_mcbond_it2.657
r_mcangle_other2.123
r_scangle_other1.855
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.088
r_dihedral_angle_3_deg13.214
r_dihedral_angle_1_deg6.47
r_scangle_it4.093
r_dihedral_angle_4_deg4.039
r_mcangle_it3.675
r_scbond_it2.868
r_mcbond_it2.657
r_mcangle_other2.123
r_scangle_other1.855
r_angle_refined_deg1.352
r_scbond_other0.846
r_angle_other_deg0.763
r_mcbond_other0.683
r_nbd_refined0.192
r_nbtor_refined0.172
r_symmetry_vdw_other0.171
r_nbd_other0.164
r_symmetry_hbond_refined0.161
r_xyhbond_nbd_refined0.159
r_nbtor_other0.085
r_chiral_restr0.081
r_symmetry_vdw_refined0.078
r_bond_refined_d0.016
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3031
Nucleic Acid Atoms
Solvent Atoms57
Heterogen Atoms17

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
ISASphasing
ARP/wARPmodel building