2H79

Crystal Structure of human TR alpha bound T3 in orthorhombic space group


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.22981.0 M sodium cacodylate and 0.1M sodium acetate threehydrate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.0169.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.981α = 90
b = 80.795β = 90
c = 102.211γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateMirrors2004-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8763.2598.18390693906922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.871.9177.11

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8763.254115039069208198.180.150.150.1490.187RANDOM29.302
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.03-0.190.16
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.924
r_dihedral_angle_1_deg6.397
r_scbond_it4.809
r_angle_refined_deg3.846
r_mcangle_it2.887
r_mcbond_it1.73
r_symmetry_vdw_refined0.327
r_chiral_restr0.292
r_xyhbond_nbd_refined0.286
r_nbd_refined0.267
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.924
r_dihedral_angle_1_deg6.397
r_scbond_it4.809
r_angle_refined_deg3.846
r_mcangle_it2.887
r_mcbond_it1.73
r_symmetry_vdw_refined0.327
r_chiral_restr0.292
r_xyhbond_nbd_refined0.286
r_nbd_refined0.267
r_symmetry_hbond_refined0.247
r_bond_refined_d0.041
r_gen_planes_refined0.014
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2237
Nucleic Acid Atoms
Solvent Atoms427
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction