X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.529420% (w/v) PEG 3350; 0.175 M NaCl; 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.2745.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.947α = 90
b = 93.687β = 98.12
c = 94.46γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2006-03-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.70.06112.54.15427933.38
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.1899.50.3834.15402

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.118.7354001275799.370.2080.2050.251RANDOM21.719
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.61-0.130.15-0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.971
r_dihedral_angle_3_deg12.974
r_dihedral_angle_4_deg11.161
r_dihedral_angle_1_deg6.692
r_scangle_it2.559
r_scbond_it1.751
r_angle_refined_deg1.439
r_mcangle_it1.159
r_angle_other_deg0.979
r_mcbond_it0.654
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.971
r_dihedral_angle_3_deg12.974
r_dihedral_angle_4_deg11.161
r_dihedral_angle_1_deg6.692
r_scangle_it2.559
r_scbond_it1.751
r_angle_refined_deg1.439
r_mcangle_it1.159
r_angle_other_deg0.979
r_mcbond_it0.654
r_nbd_refined0.208
r_nbd_other0.199
r_nbtor_refined0.177
r_mcbond_other0.171
r_symmetry_vdw_other0.17
r_xyhbond_nbd_refined0.146
r_symmetry_vdw_refined0.138
r_metal_ion_refined0.104
r_nbtor_other0.087
r_chiral_restr0.08
r_bond_refined_d0.014
r_symmetry_hbond_refined0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6694
Nucleic Acid Atoms
Solvent Atoms301
Heterogen Atoms46

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
HKL-2000data reduction
HKL-2000data scaling