X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.429315-30% PEG 3350, 0.1M HEPES,10 MM MNCL2, pH 7.4, temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.2645.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.011α = 90
b = 118.945β = 106.95
c = 86.506γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++BLUE OSMIC Confocal MIRRORS2007-06-19SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.910099.20.137.95.596505
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9796.30.684.79302

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.930.8296452482399.120.2070.2050.256RANDOM12.281
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.040.140.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.273
r_dihedral_angle_4_deg17.811
r_dihedral_angle_3_deg14.352
r_dihedral_angle_1_deg5.711
r_scangle_it1.774
r_angle_refined_deg1.119
r_scbond_it1.115
r_mcangle_it0.68
r_mcbond_it0.379
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.273
r_dihedral_angle_4_deg17.811
r_dihedral_angle_3_deg14.352
r_dihedral_angle_1_deg5.711
r_scangle_it1.774
r_angle_refined_deg1.119
r_scbond_it1.115
r_mcangle_it0.68
r_mcbond_it0.379
r_nbtor_refined0.302
r_nbd_refined0.185
r_symmetry_vdw_refined0.182
r_metal_ion_refined0.15
r_symmetry_hbond_refined0.142
r_xyhbond_nbd_refined0.126
r_chiral_restr0.077
r_bond_refined_d0.009
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9618
Nucleic Acid Atoms
Solvent Atoms1062
Heterogen Atoms18

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection