X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.429812-30% PEG 3350, 0.1M HEPES, 10 MM MNCL2, pH 7.4, temperature 298K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.2445.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.67α = 90
b = 119.66β = 108.9
c = 90.867γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray118IMAGE PLATERIGAKU RAXIS IV++BLUE OSMIC Confocal MIRRORS2007-05-29SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9510096.50.1059.56.886353
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.0294.60.7056.38410

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.9529.9286305432796.360.1850.1830.222RANDOM19.115
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.150.15-0.120.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.064
r_dihedral_angle_4_deg16.704
r_dihedral_angle_3_deg14.682
r_dihedral_angle_1_deg5.625
r_scangle_it1.881
r_scbond_it1.156
r_angle_refined_deg1.125
r_mcangle_it0.706
r_mcbond_it0.383
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.064
r_dihedral_angle_4_deg16.704
r_dihedral_angle_3_deg14.682
r_dihedral_angle_1_deg5.625
r_scangle_it1.881
r_scbond_it1.156
r_angle_refined_deg1.125
r_mcangle_it0.706
r_mcbond_it0.383
r_nbtor_refined0.302
r_nbd_refined0.187
r_symmetry_hbond_refined0.182
r_symmetry_vdw_refined0.162
r_xyhbond_nbd_refined0.134
r_metal_ion_refined0.105
r_chiral_restr0.078
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9636
Nucleic Acid Atoms
Solvent Atoms1018
Heterogen Atoms24

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction