3I3F

Hypothetical protein from Giardia lamblia GL50803_14299


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1sitting drop, vapor diffusion5.5290100 mM Tris, pH 5.5, 25% PEG 3350, 200 mM ammonium acetate, sitting drop, vapor diffusion, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.1738.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 119.9α = 90
b = 119.9β = 90
c = 104.59γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC Quantum-315R CCD2009-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.9795SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3539.4199.50.0740.07413.56.38264382643
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.4296.60.5220.5221.44.811601

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.3537.358262641341000.1770.1760.191RANDOM14.501
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.040.04-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.15
r_dihedral_angle_4_deg16.625
r_dihedral_angle_3_deg9.796
r_dihedral_angle_1_deg5.331
r_scangle_it1.224
r_angle_refined_deg0.893
r_angle_other_deg0.726
r_scbond_it0.724
r_mcangle_it0.599
r_mcbond_it0.318
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.15
r_dihedral_angle_4_deg16.625
r_dihedral_angle_3_deg9.796
r_dihedral_angle_1_deg5.331
r_scangle_it1.224
r_angle_refined_deg0.893
r_angle_other_deg0.726
r_scbond_it0.724
r_mcangle_it0.599
r_mcbond_it0.318
r_chiral_restr0.052
r_mcbond_other0.043
r_bond_refined_d0.004
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2971
Nucleic Acid Atoms
Solvent Atoms443
Heterogen Atoms20

Software

Software
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction