3L4U

Crystal complex of N-terminal Human Maltase-Glucoamylase with de-O-sulfonated kotalanol


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529320% PEG 3350, 0.2M sodium sulfate, pH 6.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.754.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.865α = 90
b = 109.866β = 90
c = 109.838γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42009-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F10.9175CHESSF1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.93099.90.1218.9784175
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.971000.6086.78304

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.92083225415898.480.1850.1840.221RANDOM21.744
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.7-0.33-1.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.164
r_dihedral_angle_4_deg16.973
r_dihedral_angle_3_deg13.695
r_dihedral_angle_1_deg6.561
r_scangle_it4.01
r_scbond_it2.628
r_mcangle_it1.658
r_angle_refined_deg1.576
r_mcbond_it1.035
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.164
r_dihedral_angle_4_deg16.973
r_dihedral_angle_3_deg13.695
r_dihedral_angle_1_deg6.561
r_scangle_it4.01
r_scbond_it2.628
r_mcangle_it1.658
r_angle_refined_deg1.576
r_mcbond_it1.035
r_nbtor_refined0.314
r_symmetry_vdw_refined0.305
r_symmetry_hbond_refined0.224
r_nbd_refined0.208
r_xyhbond_nbd_refined0.154
r_chiral_restr0.122
r_bond_refined_d0.016
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6994
Nucleic Acid Atoms
Solvent Atoms596
Heterogen Atoms83

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction