X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293200 mM ammonium formate, 20% PEG 3350, 500 mM L-arabinose
Crystal Properties
Matthews coefficientSolvent content
2.3848.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.21α = 90
b = 96.21β = 90
c = 187.84γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-07-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9796DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0528.541000.99917.3372.3756151
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.091000.8312.1174.92

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.0528.5453209285799.930.170220.168220.20709RANDOM34.155
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.39-1.392.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.021
r_dihedral_angle_4_deg18.641
r_dihedral_angle_3_deg12.892
r_dihedral_angle_1_deg6.56
r_long_range_B_refined4.973
r_long_range_B_other4.973
r_scangle_other3.922
r_mcangle_it2.661
r_mcangle_other2.661
r_scbond_it2.661
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.021
r_dihedral_angle_4_deg18.641
r_dihedral_angle_3_deg12.892
r_dihedral_angle_1_deg6.56
r_long_range_B_refined4.973
r_long_range_B_other4.973
r_scangle_other3.922
r_mcangle_it2.661
r_mcangle_other2.661
r_scbond_it2.661
r_scbond_other2.661
r_mcbond_it1.928
r_mcbond_other1.927
r_angle_refined_deg1.546
r_angle_other_deg0.977
r_chiral_restr0.093
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6134
Nucleic Acid Atoms
Solvent Atoms355
Heterogen Atoms11

Software

Software
Software NamePurpose
XDSdata reduction
XDSdata scaling
Aimlessdata scaling
SHELXCDphasing
SHELXEmodel building
ARP/wARPmodel building
BUCCANEERmodel building
Cootmodel building
REFMACrefinement