X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2940.1 M Tris-HCl, 1 mM EDTA, pH 7.4 2.56 M Ammonium Sulfate
Crystal Properties
Matthews coefficientSolvent content
1.935.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.437α = 90
b = 30.778β = 105.47
c = 64.043γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 200K2013-10-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.785099.50.0510.0560.02243.1612651
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.8192.20.0670.0780.0390.9913.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.7833.191202461899.580.16160.15970.1989RANDOM20.972
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.493.011.41-4.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.013
r_dihedral_angle_4_deg24.536
r_dihedral_angle_3_deg15.226
r_dihedral_angle_1_deg5.166
r_angle_refined_deg1.907
r_angle_other_deg0.941
r_chiral_restr0.151
r_bond_refined_d0.018
r_gen_planes_refined0.011
r_gen_planes_other0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.013
r_dihedral_angle_4_deg24.536
r_dihedral_angle_3_deg15.226
r_dihedral_angle_1_deg5.166
r_angle_refined_deg1.907
r_angle_other_deg0.941
r_chiral_restr0.151
r_bond_refined_d0.018
r_gen_planes_refined0.011
r_gen_planes_other0.006
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1213
Nucleic Acid Atoms
Solvent Atoms99
Heterogen Atoms64

Software

Software
Software NamePurpose
HKL-3000data collection
HKL-3000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKLdata scaling