X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1WUU 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.8286Seeding into drops containing GALK protein at 8 mg/ml, 2.3M Na/K pH6.8
Crystal Properties
Matthews coefficientSolvent content
3.4464.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 129.407α = 90
b = 129.407β = 90
c = 240.548γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2015-02-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-11.1271SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.23099.30.1750.1770.0237.242.760586
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2895.30.3750.61116.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1WUU2.23058502200099.190.16010.15790.2255RANDOM54.983
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.53-0.76-1.534.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.739
r_dihedral_angle_4_deg18.984
r_dihedral_angle_3_deg17.197
r_dihedral_angle_1_deg7.503
r_rigid_bond_restr3.958
r_angle_refined_deg1.741
r_angle_other_deg1.363
r_chiral_restr0.223
r_bond_refined_d0.011
r_gen_planes_refined0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.739
r_dihedral_angle_4_deg18.984
r_dihedral_angle_3_deg17.197
r_dihedral_angle_1_deg7.503
r_rigid_bond_restr3.958
r_angle_refined_deg1.741
r_angle_other_deg1.363
r_chiral_restr0.223
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5900
Nucleic Acid Atoms
Solvent Atoms242
Heterogen Atoms146

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHENIXphasing