Ligand validation:1RD8

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 1RD8 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1RD8_NAG_A_1	10%	24%	0.205	0.714	1.08	2.03	1	6	0	1	100%	0.9333
1RD8_NAG_C_330	7%	24%	0.208	0.654	1.09	2	1	6	0	1	100%	0.9333
1RD8_NAG_A_2	5%	43%	0.226	0.644	0.57	1.6	-	3	0	1	100%	0.9333
1RD8_NAG_B_183	5%	45%	0.228	0.631	0.56	1.53	-	4	2	1	100%	0.9333
1RD8_NAG_E_330	2%	12%	0.242	0.502	1.49	2.59	3	7	0	1	100%	0.9333
1RD8_NAG_C_335	1%	47%	0.29	0.496	0.74	1.28	-	2	0	0	100%	0.9333
2WRG_NAG_J_1328	73%	24%	0.091	0.918	0.64	2.44	-	6	3	0	100%	1
3GBN_NAG_A_330	37%	45%	0.206	0.904	0.72	1.4	1	1	1	0	100%	0.9333
3R2X_NAG_A_501	28%	28%	0.172	0.824	0.77	2.08	1	4	0	0	100%	0.9333
4PY8_NAG_A_401	28%	45%	0.118	0.766	0.7	1.39	-	2	0	0	100%	0.9333
4GXU_NAG_G_401	22%	63%	0.188	0.806	0.66	0.77	-	-	0	0	100%	0.9333
3H0C_NAG_A_794	100%	56%	0.021	0.995	0.61	1.08	-	1	0	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	0	100%	0.9333
3GXM_NAG_A_498	100%	45%	0.026	0.992	0.75	1.34	-	2	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.