Download MendeleyCrystal structure of Metal-dependent hydrolase of cytosinedemaniase/chlorohydrolase family (TM0936) from Thermotoga maritima at 1.9 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1J6P
Crystal structure of Metal-dependent hydrolase of cytosinedemaniase/chlorohydrolase family (TM0936) from Thermotoga maritima at 1.9 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1J6P/pdb
- Classification: HYDROLASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2002-07-09 Released: 2002-10-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.202
- R-Value Work: 0.175
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| METAL-DEPENDENT HYDROLASE OF CYTOSINEDEMANIASE/CHLOROHYDROLASE FAMILY | 418 | Thermotoga maritima | Mutation(s): 15 Gene Names: TM0936 EC: 3.5.4.31 (UniProt), 3.5.4.28 (UniProt) |  | |
UniProt | |||||
Find proteins for Q9X034 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X034 Go to UniProtKB: Q9X034 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X034 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.202
- R-Value Work: 0.175
- R-Value Observed: 0.175
- Space Group: P 32 2 1
- Diffraction Data: https://doi.org/10.18430/M31J6P
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.782 | α = 90 |
| b = 113.782 | β = 90 |
| c = 81.305 | γ = 120 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| MOSFLM | data reduction |
| SCALA | data scaling |
| CCP4 | data reduction |
| SnB | phasing |
| MLPHARE | phasing |
| CCP4 | model building |
| SOLVE | phasing |
| CNS | refinement |
| CCP4 | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2002-10-30 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2002-10-30
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2018-07-18
Changes: Advisory, Data collection, Database references - Version 1.4: 2023-12-27
Changes: Advisory, Data collection, Database references, Derived calculations - Version 1.5: 2024-11-13
Changes: Structure summary
