Download MendeleyCrystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
Yamamoto, H., Kunishima, N.To be published.
1YYA
Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb1YYA/pdb
- Classification: ISOMERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-02-24 Released: 2005-03-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.182
- R-Value Work: 0.174
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| triosephosphate isomerase | 250 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 5.3.1.1 |  | |
UniProt | |||||
Find proteins for Q5SJR1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJR1 Go to UniProtKB: Q5SJR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SJR1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | D [auth A] E [auth A] F [auth A] G [auth A] I [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| NA Query on NA | C [auth A], H [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.182
- R-Value Work: 0.174
- R-Value Observed: 0.174
- Space Group: I 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 87.612 | α = 90 |
| b = 118.382 | β = 90 |
| c = 120.677 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2005-03-15 Deposition Author(s): Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2005-03-15
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2024-03-13
Changes: Data collection, Database references, Derived calculations
