Download MendeleyX-Ray Diffraction Study of the Complex of the Enzyme Saicar Synthase with the Reaction Product
Urusova, D.V., Levdikov, V.M., Antonyuk, S.V., Grebenko, A.I., Lamzin, V.S., Melik-Adamyan, V.R.(2006) Crystallogr Rep 51: 824
2CNV
SAICAR-synthase from Saccharomyces cerevisiae complexed SAICAR
- PDB DOI: https://doi.org/10.2210/pdb2CNV/pdb
- Classification: LIGASE
- Organism(s): Saccharomyces cerevisiae
- Mutation(s): No
- Deposited: 2006-05-24 Released: 2006-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.238
- R-Value Work: 0.173
- R-Value Observed: 0.177
Starting Model: experimental
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This is version 1.5 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE | 306 | Saccharomyces cerevisiae | Mutation(s): 0 EC: 6.3.2.6 |  | |
UniProt | |||||
Find proteins for P27616 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P27616 Go to UniProtKB: P27616 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P27616 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SSS Query on SSS | D [auth A] | N-{[5-AMINO-1-(5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZOL-4-YL]CARBONYL}-L-ASPARTIC ACID C13 H19 N4 O12 P NAQGHJTUZRHGAC-PSYSQGJASA-N |  | ||
| ASP Query on ASP | B [auth A], C [auth A] | ASPARTIC ACID C4 H7 N O4 CKLJMWTZIZZHCS-REOHCLBHSA-N |  | ||
| SO4 Query on SO4 | E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.238
- R-Value Work: 0.173
- R-Value Observed: 0.177
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.85 | α = 90 |
| b = 62.75 | β = 90 |
| c = 77.7 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-06-08 Deposition Author(s): Urusova, D.V., Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Barynin, V.V., Popov, A.N., Lamzin, V.S., Melik-Adamyan, V.R.
Revision History (Full details and data files)
- Version 1.0: 2006-06-08
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations - Version 1.4: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description - Version 1.5: 2024-11-20
Changes: Structure summary
