Download MendeleyCrystal structure of the blue multicopper oxidase from the white-rot fungus Trametes trogii complexed with p-toluate
Matera, I., Gullotto, A., Tilli, S., Ferraroni, M., Scozzafava, A., Briganti, F.(2008) Inorganica Chim Acta 361: 4129-4137
2HRG
Crystal Structure of Blue Laccase from Trametes trogii complexed with p-methylbenzoate
- PDB DOI: https://doi.org/10.2210/pdb2HRG/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Coriolopsis trogii
- Mutation(s): No
- Deposited: 2006-07-20 Released: 2007-09-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.58 Å
- R-Value Free: 0.192
- R-Value Work: 0.174
- R-Value Observed: 0.175
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Laccase | 496 | Coriolopsis trogii | Mutation(s): 0 EC: 1.10.3.2 |  | |
UniProt | |||||
Find proteins for Q9HDQ0 (Coriolopsis trogii) Explore Q9HDQ0 Go to UniProtKB: Q9HDQ0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HDQ0 | ||||
Glycosylation | |||||
| Glycosylation Sites: 2 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 4 |  | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan: G22573RC GlyCosmos: G22573RC GlyGen: G22573RC | |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 4MA Query on 4MA | N [auth A] | 4-METHYLBENZOIC ACID C8 H8 O2 LPNBBFKOUUSUDB-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | K [auth A], L [auth A], M [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CU Query on CU | G [auth A], H [auth A], I [auth A], J [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| CA Query on CA | D [auth A], E [auth A], F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.58 Å
- R-Value Free: 0.192
- R-Value Work: 0.174
- R-Value Observed: 0.175
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.385 | α = 90 |
| b = 85.128 | β = 90 |
| c = 108.561 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-09-11 Deposition Author(s): Matera, I., Gullotto, A., Ferraroni, M., Tilli, S., Briganti, F., Scozzafava, A.
Revision History (Full details and data files)
- Version 1.0: 2007-09-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2024-04-03
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
