Download MendeleyX-ray Structure of the Uridine Phosphorylase From SALMONELLA TYPHIMURIUM in Complex with Inhibitor and Phosphate and Potassium Ion at 1.74 A Resolution
Timofeev, V.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.To be published.
2PGA
X-ray Structure of the Uridine Phosphorylase From SALMONELLA TYPHIMURIUM in Complex with Inhibitor and Phosphate and Potassium Ion at 1.74 A Resolution
- PDB DOI: https://doi.org/10.2210/pdb2PGA/pdb
- Classification: TRANSFERASE
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-04-09 Released: 2008-04-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.210
- R-Value Work: 0.181
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | 253 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0 Gene Names: udp EC: 2.4.2.3 |  | |
UniProt | |||||
Find proteins for P0A1F6 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0A1F6 Go to UniProtKB: P0A1F6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A1F6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANU Query on ANU | J [auth B], L [auth D], O [auth F] | 2,2'-Anhydro-(1-beta-D-arabinofuranosyl)uracil C9 H10 N2 O5 UUGITDASWNOAGG-CCXZUQQUSA-N |  | ||
| PO4 Query on PO4 | H [auth B], K [auth D], N [auth F] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| K Query on K | G [auth A], I [auth B], M [auth E] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.210
- R-Value Work: 0.181
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.79 | α = 90 |
| b = 124.07 | β = 90 |
| c = 134.11 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2008-04-15 Deposition Author(s): Timofeev, V.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.
Revision History (Full details and data files)
- Version 1.0: 2008-04-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-18
Changes: Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
