Download MendeleyX-ray structure of the uridine phosphorylase from salmonella typhimurium in complex with 2,2'-anhydrouridine at 2.38a resolution
Lashkov, A.A., Mikhailov, A.M.To be published.
3C74
X-ray structure of the uridine phosphorylase from salmonella typhimurium in complex with 2,2'-anhydrouridine at 2.38a resolution
- PDB DOI: https://doi.org/10.2210/pdb3C74/pdb
- Classification: TRANSFERASE
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-02-06 Released: 2009-02-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.258
- R-Value Work: 0.208
- R-Value Observed: 0.209
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | 253 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 0 Gene Names: udp EC: 2.4.2.3 |  | |
UniProt | |||||
Find proteins for P0A1F6 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0A1F6 Go to UniProtKB: P0A1F6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A1F6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANU Query on ANU | G [auth A] H [auth B] I [auth C] J [auth D] K [auth E] | 2,2'-Anhydro-(1-beta-D-arabinofuranosyl)uracil C9 H10 N2 O5 UUGITDASWNOAGG-CCXZUQQUSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.258
- R-Value Work: 0.208
- R-Value Observed: 0.209
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.37 | α = 90 |
| b = 125.308 | β = 90 |
| c = 135.177 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2009-02-10 Deposition Author(s): Lashkov, A.A., Mikhailov, A.M.
Revision History (Full details and data files)
- Version 1.0: 2009-02-10
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-18
Changes: Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
