Download MendeleyCrystal structure of the complex of peptidoglycan recognition protein with methyoxane-2,3,4,5-tetrol at 2.9 A resolution
Sharma, P., Kaur, A., Singh, N., Sharma, S., Bhushan, A., Pathak, K.M.L., Kaur, P., Singh, T.P.To be published.
3CG9
Crystal structure of the complex of peptidoglycan recognition protein with methyloxane-2,3,4,5-tetrol at 2.9 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3CG9/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Camelus dromedarius
- Mutation(s): No
- Deposited: 2008-03-05 Released: 2008-04-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.247
- R-Value Work: 0.194
- R-Value Observed: 0.194
Starting Model: experimental
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This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptidoglycan recognition protein | 171 | Camelus dromedarius | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q9GK12 (Camelus dromedarius) Explore Q9GK12 Go to UniProtKB: Q9GK12 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9GK12 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RAM Query on RAM | E [auth A], F [auth B] | alpha-L-rhamnopyranose C6 H12 O5 SHZGCJCMOBCMKK-HGVZOGFYSA-N |  | ||
| TLA Query on TLA | G [auth C] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.247
- R-Value Work: 0.194
- R-Value Observed: 0.194
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.255 | α = 90 |
| b = 101.995 | β = 90 |
| c = 164.082 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| AMoRE | phasing |
| CNS | refinement |
| AUTOMAR | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2008-04-01 Deposition Author(s): Sharma, P., Kaur, A., Singh, N., Sharma, S., Bhushan, A., Pathak, K.M.L., Kaur, P., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2008-04-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary - Version 1.4: 2024-10-09
Changes: Structure summary
