Download MendeleyCrystal structure of a putative endoribonuclease L-PSP from Entamoeba histolytica, rhomobohedral form
Gardberg, A., Abendroth, J., Davies, D., Staker, B.To be published.
3M1X
Crystal structure of a putative endoribonuclease L-PSP from Entamoeba histolytica, rhomobohedral form
- PDB DOI: https://doi.org/10.2210/pdb3M1X/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Entamoeba histolytica HM-1:IMSS
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-03-05 Released: 2010-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.131
- R-Value Work: 0.106
- R-Value Observed: 0.107
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative Endoribonuclease L-PSP | 148 | Entamoeba histolytica HM-1:IMSS | Mutation(s): 0 Gene Names: EHI_087570 |  | |
UniProt | |||||
Find proteins for C4LXT9 (Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)) Explore C4LXT9 Go to UniProtKB: C4LXT9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C4LXT9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FLC Query on FLC | B [auth A] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MHO Query on MHO | A | L-PEPTIDE LINKING | C5 H11 N O3 S |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.131
- R-Value Work: 0.106
- R-Value Observed: 0.107
- Space Group: H 3 2
- Diffraction Data: https://doi.org/10.18430/M33M1X
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.546 | α = 90 |
| b = 78.546 | β = 90 |
| c = 89.18 | γ = 120 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2010-03-31 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-03-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-11-06
Changes: Structure summary
