Download MendeleyThe crystal structure of a fat acid (stearic acid)-binding protein from Eubacterium ventriosum ATCC 27560.
Zhang, R., Tan, K., Li, H., Keigher, L., Babnigg, G., Joachimiak, A.To be published.
3NYI
The crystal structure of a fat acid (stearic acid)-binding protein from Eubacterium ventriosum ATCC 27560.
- PDB DOI: https://doi.org/10.2210/pdb3NYI/pdb
- Classification: LIPID BINDING PROTEIN
- Organism(s): Eubacterium ventriosum ATCC 27560
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-07-15 Released: 2010-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.220
- R-Value Work: 0.168
- R-Value Observed: 0.171
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| fat acid-binding protein | 296 | Eubacterium ventriosum ATCC 27560 | Mutation(s): 0 Gene Names: EUBVEN_01190 |  | |
UniProt | |||||
Find proteins for A5Z657 (Eubacterium ventriosum ATCC 27560) Explore A5Z657 Go to UniProtKB: A5Z657 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5Z657 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| STE Query on STE | C [auth A], D [auth B] | STEARIC ACID C18 H36 O2 QIQXTHQIDYTFRH-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.220
- R-Value Work: 0.168
- R-Value Observed: 0.171
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.725 | α = 90 |
| b = 110.221 | β = 108.62 |
| c = 57.127 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2010-09-22 Deposition Author(s): Zhang, R., Tan, K., Li, H., Keigher, L., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2016-12-21
Changes: Structure summary - Version 1.3: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary
