Crystallographic structure analysis of urease from Jack bean (Canavalia ensiformis) at 1.49 A Resolution
Begum, A., Banumathi, S., Choudhary, M.I., Betzel, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Urease | 840 | Canavalia ensiformis | Mutation(s): 0  EC: 3.5.1.5 | ||
UniProt | |||||
Find proteins for P07374 (Canavalia ensiformis) Explore P07374  Go to UniProtKB:  P07374 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P07374 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | D [auth A], X [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
BME Query on BME | T [auth A] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NI Query on NI | B [auth A], C [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N | |||
ACN Query on ACN | O [auth A], P [auth A], Q [auth A], R [auth A], S [auth A] | ACETONE C3 H6 O CSCPPACGZOOCGX-UHFFFAOYSA-N | |||
NA Query on NA | Y [auth A], Z [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CME Query on CME | A | L-PEPTIDE LINKING | C5 H11 N O3 S2 | CYS | |
KCX Query on KCX | A | L-PEPTIDE LINKING | C7 H14 N2 O4 | LYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 140.664 | α = 90 |
b = 140.664 | β = 90 |
c = 198.109 | γ = 120 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
MOLREP | phasing |
PHENIX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |