Download MendeleyStructure, function and allostery of the bona fide DHDPS from the plant pathogen Agrobacterium tumefaciens
Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.To be published.
4I7W
Agrobacterium tumefaciens DHDPS with lysine and pyruvate
- PDB DOI: https://doi.org/10.2210/pdb4I7W/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Agrobacterium tumefaciens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-12-01 Released: 2013-12-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.186
- R-Value Work: 0.172
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydrodipicolinate synthase | 308 | Agrobacterium tumefaciens | Mutation(s): 0 Gene Names: dapA, AGROH133_05014 EC: 4.2.1.52 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LYS Query on LYS | C [auth A], D [auth B] | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O |  | ||
| GOL Query on GOL | E [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KPI Query on KPI | A, B | L-PEPTIDE LINKING | C9 H16 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.186
- R-Value Work: 0.172
- R-Value Observed: 0.172
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.09 | α = 90 |
| b = 122.78 | β = 90 |
| c = 129.64 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2013-12-04 Deposition Author(s): Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.
Revision History (Full details and data files)
- Version 1.0: 2013-12-04
Type: Initial release
