Download MendeleyPhosphoethanolamine N-methyl transferase is a Malarial drug target
Lukk, T., Nair, S.K.To be published.
4IV0
Crystal structure of N-methyl transferase from Plasmodium vivax complexed with S-adenosyl methionine and phosphate
- PDB DOI: https://doi.org/10.2210/pdb4IV0/pdb
- Classification: TRANSFERASE
- Organism(s): Plasmodium vivax Sal-1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-01-22 Released: 2014-02-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.178
- R-Value Work: 0.157
- R-Value Observed: 0.158
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoethanolamine N-methyltransferase, putative | 284 | Plasmodium vivax Sal-1 | Mutation(s): 0 Gene Names: PVX_083045 EC: 2.1.1.103 |  | |
UniProt | |||||
Find proteins for A5K867 (Plasmodium vivax (strain Salvador I)) Explore A5K867 Go to UniProtKB: A5K867 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5K867 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAM Query on SAM | D [auth A], F [auth B] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N |  | ||
| PO4 Query on PO4 | C [auth A], E [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| BME Query on BME | G [auth B] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.178
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.17 | α = 90 |
| b = 86.87 | β = 101.05 |
| c = 79.58 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2014-02-19 Deposition Author(s): Lukk, T., Nair, S.K.
Revision History (Full details and data files)
- Version 1.0: 2014-02-19
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
