Download MendeleyA Virulent Siphophage CyoEM Structure and Host Recognition and Infection Mechanism
Farenc, C., Spinelli, S., Bebeacua, C., Tremblay, D., Orlov, I., Blangy, S., Klaholz, B.P., Moineau, S., Cambillau, C.To be published.
4L9B
Structure of native RBP from lactococcal phage 1358 (CsI derivative)
- PDB DOI: https://doi.org/10.2210/pdb4L9B/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Lactococcus phage 1358
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2013-06-18 Released: 2014-04-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.201
- R-Value Work: 0.169
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Receptor Binding Protein | 393 | Lactococcus phage 1358 | Mutation(s): 0 Gene Names: ORF20 |  | |
UniProt | |||||
Find proteins for D3W0F1 (Lactococcus phage 1358) Explore D3W0F1 Go to UniProtKB: D3W0F1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D3W0F1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CS Query on CS | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | CESIUM ION Cs NCMHKCKGHRPLCM-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.201
- R-Value Work: 0.169
- R-Value Observed: 0.171
- Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 107.61 | α = 90 |
| b = 107.61 | β = 90 |
| c = 107.61 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PROTEUM PLUS | data collection |
| SHELXS | phasing |
| BUSTER | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2014-04-30 Deposition Author(s): Farenc, C., Spinelli, S., Bebeacua, C., Tremblay, D., Orlov, I., Blangy, S., Klaholz, B.P., Moineau, S., Cambillau, C.
Revision History (Full details and data files)
- Version 1.0: 2014-04-30
Type: Initial release - Version 1.1: 2018-06-13
Changes: Data collection - Version 1.2: 2024-02-28
Changes: Data collection, Database references, Derived calculations
