Download MendeleyStructure of a glucose-6-phosphate isomerase from Trypanosoma cruzi
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Lucaks, C., Lorimer, D., Edwards, T.E.To be published.
4QFH
Structure of a glucose-6-phosphate isomerase from Trypanosoma cruzi
- PDB DOI: https://doi.org/10.2210/pdb4QFH/pdb
- Classification: ISOMERASE
- Organism(s): Trypanosoma cruzi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-05-21 Released: 2014-06-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.174
- R-Value Work: 0.139
- R-Value Observed: 0.141
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glucose-6-phosphate isomerase | 616 | Trypanosoma cruzi | Mutation(s): 0 Gene Names: Tc00.1047053506529.508, TcC31.19 EC: 5.3.1.9 |  | |
UniProt | |||||
Find proteins for Q4E5N1 (Trypanosoma cruzi (strain CL Brener)) Explore Q4E5N1 Go to UniProtKB: Q4E5N1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4E5N1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G6P Query on G6P | C [auth A], D [auth B] | 6-O-phosphono-alpha-D-glucopyranose C6 H13 O9 P NBSCHQHZLSJFNQ-DVKNGEFBSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.174
- R-Value Work: 0.139
- R-Value Observed: 0.141
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34QFH
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.84 | α = 90 |
| b = 127.03 | β = 109.74 |
| c = 72.4 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2014-06-18 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2014-06-18
Type: Initial release - Version 1.1: 2017-11-22
Changes: Refinement description - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-09-20
Changes: Data collection, Database references, Refinement description, Structure summary
