Download MendeleyThe 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid.
Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.To be published.
5B27
The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid
- PDB DOI: https://doi.org/10.2210/pdb5B27/pdb
- Classification: LIPID BINDING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2016-01-12 Released: 2017-01-18
- Funding Organization(s): JSPS KAKENHI
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.02 Å
- R-Value Free: 0.129
- R-Value Work: 0.113
- R-Value Observed: 0.114
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fatty acid-binding protein, heart | 133 | Homo sapiens | Mutation(s): 1 Gene Names: FABP3, FABP11, MDGI |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05413 (Homo sapiens) Explore P05413 Go to UniProtKB: P05413 | |||||
PHAROS: P05413 GTEx: ENSG00000121769 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05413 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLM Query on PLM | B [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N |  | ||
| PG4 Query on PG4 | C [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.02 Å
- R-Value Free: 0.129
- R-Value Work: 0.113
- R-Value Observed: 0.114
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.604 | α = 90 |
| b = 70.057 | β = 90 |
| c = 33.921 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-01-18 Deposition Author(s): Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| JSPS KAKENHI | Japan | 25650051 |
| JSPS KAKENHI | Japan | 25286051 |
| JSPS KAKENHI | Japan | 24681045 |
| JSPS KAKENHI | Japan | 26560436 |
Revision History (Full details and data files)
- Version 1.0: 2017-01-18
Type: Initial release - Version 1.1: 2020-02-26
Changes: Data collection - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description
