Download MendeleyStructure of the complex of type 1 Ribosome inactivating protein with triethanolamine at 1.88 Angstrom resolution.
Singh, P.K., Pandey, S., Tyagi, T.K., Singh, A., Kaur, P., Sharma, S., Singh, T.P.To be published.
5CIX
Structure of the complex of type 1 Ribosome inactivating protein with triethanolamine at 1.88 Angstrom resolution
- PDB DOI: https://doi.org/10.2210/pdb5CIX/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Momordica balsamina
- Mutation(s): No
- Deposited: 2015-07-13 Released: 2015-08-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.218
- R-Value Work: 0.166
- R-Value Observed: 0.169
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosome inactivating protein | 246 | Momordica balsamina | Mutation(s): 0 EC: 3.2.2.22 |  | |
UniProt | |||||
Find proteins for D9J2T9 (Momordica balsamina) Explore D9J2T9 Go to UniProtKB: D9J2T9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D9J2T9 | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| 211 Query on 211 | C [auth A] | 2,2',2''-NITRILOTRIETHANOL C6 H15 N O3 GSEJCLTVZPLZKY-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.218
- R-Value Work: 0.166
- R-Value Observed: 0.169
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 130.262 | α = 90 |
| b = 130.262 | β = 90 |
| c = 38.158 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data collection |
| SCALEPACK | data scaling |
| MOLREP | model building |
| PDB_EXTRACT | data extraction |
| SCALEPACK | data reduction |
| Coot | phasing |
Entry History
Deposition Data
- Released Date: 2015-08-12 Deposition Author(s): Singh, P.K., Pandey, S., Tyagi, T.K., Singh, A., Kaur, P., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2015-08-12
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary - Version 1.3: 2024-11-13
Changes: Structure summary
