Download MendeleyCrystal structure of Fructokinase from Vibrio cholerae O395 in apo form
Paul, R., Nath, S., Sen, U.To be published.
5EYN
Crystal structure of Fructokinase from Vibrio cholerae O395 in fructose, ADP, Beryllium trifluoride and calcium ion bound form
- PDB DOI: https://doi.org/10.2210/pdb5EYN/pdb
- Classification: TRANSFERASE
- Organism(s): Vibrio cholerae O395
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-11-25 Released: 2016-11-30
- Funding Organization(s): Department of Atomic Energy
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.29 Å
- R-Value Free: 0.169
- R-Value Work: 0.141
- R-Value Observed: 0.142
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fructokinase | 323 | Vibrio cholerae O395 | Mutation(s): 0 Gene Names: cscK, VC0395_0600 EC: 2.7.1.4 |  | |
UniProt | |||||
Find proteins for A0A0H3AER7 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A0A0H3AER7 Go to UniProtKB: A0A0H3AER7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3AER7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP Query on ADP | E [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| FRU Query on FRU | B [auth A] | beta-D-fructofuranose C6 H12 O6 RFSUNEUAIZKAJO-ARQDHWQXSA-N |  | ||
| BEF Query on BEF | D [auth A] | BERYLLIUM TRIFLUORIDE ION Be F3 OGIAHMCCNXDTIE-UHFFFAOYSA-K |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| NA Query on NA | F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.29 Å
- R-Value Free: 0.169
- R-Value Work: 0.141
- R-Value Observed: 0.142
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.3 | α = 90 |
| b = 107.218 | β = 90 |
| c = 41.618 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Atomic Energy | India | -- |
Revision History (Full details and data files)
- Version 1.0: 2016-11-30
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary
