Download MendeleyPanDDA analysis group deposition
Coker, J.A., Bezerra, G.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Yue, W.W., Marsden, B.D.To be published.
5R5V
PanDDA analysis group deposition -- Crystal Structure of FIBRINOGEN-LIKE GLOBE DOMAIN OF HUMAN TENASCIN-C in complex with Z2856434824
- PDB DOI: https://doi.org/10.2210/pdb5R5V/pdb
- Deposition Group: G_1002131 (changed state) ExploreG_1002131
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-02-28 Released: 2020-10-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.278
- R-Value Work: 0.222
- R-Value Observed: 0.224
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tenascin C (Hexabrachion), isoform CRA_a | 220 | Homo sapiens | Mutation(s): 0 Gene Names: TNC, hCG_29852 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P24821 (Homo sapiens) Explore P24821 Go to UniProtKB: P24821 | |||||
PHAROS: P24821 GTEx: ENSG00000041982 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24821 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AXS Query on AXS | B [auth A] | 1-(4-fluorophenyl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine C12 H16 F N O SLYWRVMUMWKSOX-GFCCVEGCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.278
- R-Value Work: 0.222
- R-Value Observed: 0.224
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.691 | α = 90 |
| b = 76.691 | β = 90 |
| c = 71.676 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2020-10-28 Deposition Author(s): Coker, J.A., Bezerra, G.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Yue, W.W., Marsden, B.D.
Revision History (Full details and data files)
- Version 1.0: 2020-10-28
Type: Initial release - Version 1.1: 2024-10-23
Changes: Data collection, Database references, Structure summary
