Download MendeleyCrystal Structure of Uncharacterized Cupredoxin-like domain protein from Bacillus anthracis
Kim, Y., Maltseva, N., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
5TK2
Crystal Structure of Uncharacterized Cupredoxin-like domain protein from Bacillus anthracis
- PDB DOI: https://doi.org/10.2210/pdb5TK2/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bacillus anthracis str. Ames
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-10-06 Released: 2016-11-16
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.166
- R-Value Work: 0.135
- R-Value Observed: 0.136
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.7 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome B | 100 | Bacillus anthracis str. Ames | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A6L7H6L8 (Bacillus anthracis) Explore A0A6L7H6L8 Go to UniProtKB: A0A6L7H6L8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6L7H6L8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLT Query on MLT | F [auth A], I [auth B], M [auth D] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | ||
| CD Query on CD | E [auth A], G [auth B], J [auth C], K [auth D] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | L [auth D] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.166
- R-Value Work: 0.135
- R-Value Observed: 0.136
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/m35tk2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.226 | α = 90 |
| b = 58.023 | β = 90 |
| c = 108.796 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-11-16 Deposition Author(s): Kim, Y., Maltseva, N., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2016-11-16
Type: Initial release - Version 1.1: 2016-12-14
Changes: Database references, Structure summary - Version 1.2: 2017-02-08
Changes: Database references, Structure summary - Version 1.3: 2017-09-27
Changes: Author supporting evidence - Version 1.4: 2019-12-04
Changes: Author supporting evidence - Version 1.5: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.6: 2023-11-15
Changes: Data collection - Version 1.7: 2024-11-06
Changes: Structure summary
