Bacillus pumilus family 48 glycoside hydrolase in complex with cellobio-derived isofagomine
Alahuhta, P.M., Lunin, V.V.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycoside hydrolase | 709 | Bacillus pumilus | Mutation(s): 0  Gene Names: BPUM_1559 | ||
UniProt | |||||
Find proteins for A8FDC4 (Bacillus pumilus (strain SAFR-032)) Explore A8FDC4  Go to UniProtKB:  A8FDC4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8FDC4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
G2I Query on G2I | B [auth A], C [auth A] | (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl 4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside C18 H33 N O13 ZIMIYDWQNDRGNF-IONZOCAKSA-N | |||
9MR Query on 9MR | D [auth A] | (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside C12 H23 N O8 LEOSSOWHBSKZSO-WUYFHPBOSA-N | |||
MLI Query on MLI | T [auth A] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L | |||
EDO Query on EDO | H [auth A] I [auth A] J [auth A] K [auth A] L [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT Query on ACT | U [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CA Query on CA | E [auth A], F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
NA Query on NA | G [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 98.891 | α = 90 |
b = 98.891 | β = 90 |
c = 216.799 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PROTEUM PLUS | data collection |
PROTEUM PLUS | data processing |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Department of Energy (DOE, United States) | United States | -- |