Download MendeleyCrystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila
Braverman, K.N., Dranow, D.M., Mayclin, S.J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6EEP
Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila
- PDB DOI: https://doi.org/10.2210/pdb6EEP/pdb
- Classification: ISOMERASE
- Organism(s): Legionella pneumophila subsp. pneumophila str. Philadelphia 1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-08-15 Released: 2018-08-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.216
- R-Value Work: 0.158
- R-Value Observed: 0.161
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribose-5-phosphate isomerase A | 218 | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | Mutation(s): 0 Gene Names: rpiA, lpg0094 EC: 5.3.1.6 |  | |
UniProt | |||||
Find proteins for Q5ZZB7 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZZB7 Go to UniProtKB: Q5ZZB7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZZB7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | C [auth A], D [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.216
- R-Value Work: 0.158
- R-Value Observed: 0.161
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/m36eep
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.63 | α = 90 |
| b = 67.93 | β = 119.54 |
| c = 74 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
Entry History
Deposition Data
- Released Date: 2018-08-29 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-08-29
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
